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 Problem with Gemini IRAF for gemini data reduction (gsflat)
   
minhee
 11/15/2018 05:46AM (Read 1001 times)  
+----
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Registered: 11/15/2018
Posts: 1
Hello, all.
I have a problem with Gemini IRAF when I run gsflat for data redcution of GMOS data.
Here is the error what I saw.

---------------------------------------------------------------------------------------------------------------
gmos\$this->_split2($m[0]) gsflat "@flatFull_R1-770.txt" "MCflatFull_R1-770" bias="MCbiasFull" combflat="MCflatComb_R1-770.fits" fl_keep+ fl_oversize- fl_inter- fl_usegrad+ fl_detec- fl_seprows- order="53"

then,

Input files:
gN20180518S0174

Output files:
tmpimage14724ga

GIREDUCE: Image tmpimage14724ga overscan subtracted
GIREDUCE: Image tmpimage14724ga trimmed

Output image Bias Flat Dark Scale
tmpimage14724ga MCbiasFull INDEF INDEF 0.00
GIREDUCE: Subtracted bias MCbiasFull from tmpimage14724ga
GIREDUCE: multiplying image tmpimage14724ga by gain
GIREDUCE: output counts in electrons

GIREDUCE - Cleaning up -- 2018. 11. 15. (목) 14:37:37 KST

GIREDUCE -- 2018. 11. 15. (목) 14:37:37 KST
GIREDUCE exit status: good.
----------------------------------------------------------------------------
GSREDUCE: Calling GMOSAIC
GLOGINIT ERROR: 101 Unable to access file 'gmos.log'..
GSREDUCE: returned from GMOSAIC.
Warning: cannot rename `tmpimage24724ha.fits' -\$this->_split2($m[0]) `gsN20180518S0174.fits'
ERROR: Cannot open image (gsN20180518S0174.fits[0])
"if (imgets.value == "MOS")"
line 1168: gmos$gsreduce.cl
called as: `gsreduce (inimages=@tmpfilelist4724z, outimages=, outpref=gs, fl_over=yes, fl_trim=yes, fl_bias=yes, fl_dark=no, fl_qecorr=no, fl_flat=no, fl_gmosaic=yes, fl_fixpix=yes, fl_gsappwave=yes, fl_cut=no, fl_title=no, fl_vardq=no, fl_fulldq=no, dqthresh=0.1, bias=MCbiasFull, dark=, flatim=, gradimage=, refimage=, qe_refim=, fl_keep_qeim=yes, qe_corrpref=qecorr, qe_corrimages=, qe_data=gmosQEfactors.dat, qe_datadir=gmos$data/, key_exptime=EXPTIME, key_biassec=BIASSEC, key_datasec=DATASEC, rawpath=, sci_ext=SCI, var_ext=VAR, dq_ext=DQ, key_mdf=MASKNAME, mdffile=, mdfdir=gmos$data/, bpm=, gaindb=default, gratingdb=gmos$data/GMOSgratings.dat, filterdb=gmos$data/GMOSfilters.dat, bpmfile=gmos$data/chipgaps.dat, key_ron=RDNOISE, key_gain=GAIN, ron=3.5, gain=2.2, sat=default, ovs_flinter=no, ovs_med=no, ovs_func=chebyshev, ovs_order=default, ovs_lowr=3., ovs_highr=3., ovs_niter=2, nbiascontam=default, biasrows=default, logfile=gmos.log, verbose=yes)'
"qe_datadir=l_qecorr_datadir)"
line 914: gmos$gsflat.cl
called as: `gsflat (inflats=@flatFull_R1-770.txt, specflat=MCflatFull_R1-770, fl_keep=yes, combflat=MCflatComb_R1-770.fits, fl_oversize=no, bias=MCbiasFull, fl_usegrad=yes, fl_inter=no, fl_detec=no, fl_seprows=no, order=53)'

-------------------------------------------------------------------------------------
There was no error when I did gsflat for Long slit flats.
If I erase fl_keep+ and combflat="MCflatComb_R1-770.fits", it works without error.

I installed IRAF and Gemini IRAF as Gemini reduction page's suggestions.
My IRAF version is v. 2.16 and Gemini package is v. 1.14.
I also checked them with install_check package.

cl \$this->_split2($m[0]) task $install_check=gemini$install_check.cl
cl \$this->_split2($m[0]) install_check
/home/minhee/anaconda2/envs/geminiconda/iraf/
linux
NOAO/IRAF V2.16
/home/minhee/anaconda2/envs/geminiconda/iraf_extern/gemini/
Incompatible version of IRAF installed. Please install AstroConda (containing v2.16). FAIL
stsdas v3.18 installed. PASS
tables v3.18 installed. PASS
no files found
fitsutil package not up to date. FAIL.
gemini v1.14 installed. PASS
Linux minhee 4.16.3-301.fc28.x86_64 #1 SMP Mon Apr 23 21:59:58 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux


I saw a comment that it is better use the older version of IRAF and gemini package.
But I don't know how to downgrade IRAF and gemini package with Anaconda & geminiconda.


What should I do?







 
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