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Problem usung Splot to analyze a FITS fite

 
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surfcast23
Active IRAF User


Joined: 23 Jun 2011
Posts: 24

PostPosted: Tue Jul 19, 2011 3:18 am    Post subject: Problem usung Splot to analyze a FITS fite Reply with quote

Hi,
When I try to use splot to analyze a fits file I get a weird output of numbers and letters. I think I maybe missing something to properly display the FITS image. Any help would be greatly appreciated. Thanks


Code:
onedspec> splot /home/student/COSMOS_files/magellan_opt_095737+024329_spec_31.fits
Image line/aperture to plot (0:) (1): 1
server # XGTERM.GUI -- Default GUI for Xgterm, providing a standard graphics terminal
# emulation.

reset-server
appInitialize irafterm IRAFterm {
    IRAFterm.objects:   toplevel Gterm gterm
    *allowShellResize:  true
    *gterm.warpCursor:  true
    *gterm.raiseWindow:  true
    *gterm.deiconifyWindow:  true
}
createObjects
send gterm setGterm
activate
sre[]ssz[R]
                  
                      rir
                            rir/nc[9] ` @ `?_8k?_8k @/nc[0]#r#S#r<K6f<K6f#S/0d`/nw[2]/nc[5]#r#S#r&\$c&\#r&\0/nc[6]"p&B6000/nc[5]#r&\#r-L$c-L#r-L/nc[6]"p,R7000/nc[5]#r-L#r3\$c3\#r3\/nc[6]"p3B8000/nc[5]#r3\#r:L$c:L#r:L/nc[6]"p9R9000/nc[5]#r:L#r<K#r<K&a<K&a;Y&a<K*}<K*};Y*}<K/z<K/z;Y/z<K4v<K4v;Y4v<K6f<K#r#S&a#S&a$E&a#S/nc[6]%v!Y6000/nc[5]&a#S*}#S*}$E*}#S/nc[6]*r!Y7000/nc[5]*}#S/z#S/z$E/z#S/nc[6]/n!Y8000/nc[5]/z#S4v#S4v$E4v#S/nc[6]4j!Y9000/nc[5]4v#S6f#S6f#S6f&\5t&\6f&\6f-L5t-L6f-L6f3\5t3\6f3\6f:L5t:L6f:L6f<K/nc[3]!m+SWavelength (angstroms)7h$MNOAO/IRAF V2.15.1a student@ubuntu Mon 23:02:32 18-Jul-20116q @udent/COSMOS_files/magellan_opt_095737+024329_spec_31.fits[*,1]]: F1_85 1.1E4 ap/nw[1]/nc[1]$c$I$c$J$d$J$e$K$e$L$f$M$g$O$h$P$i$Q$j$R$j$S$k$T$m$V$m$V$n$X$n$X$o$Y$p$Z$p$[$r$]$s$^$s$_$t%@$u%A$u%B$w%C$x%E$x%F$y%G$z%H$z%H$|%J$}%L$~%M$%N%`%O%`%P%a%Q%b%S%c%T%d%U%e%V%e%W%f%X%g%Y%h%[%i%\%j%]%k%^%k%^%l%_%l&@%m&B%o&C%o&D%p&E%q&F%q&G%s&H%t&J%t&K%u&L%v&M%v&M%x&O%y&Q%z&S%{&S%{&T%|&U%}&V%~&X%&Y&`&Z&`&[&a&\&b&]&c&^&d'@&e'A&f'B&f'C&g'C&h'E&h'E&i'G&k'H&k'I&l'J&m'K&m'L&n'N&p'O&p'P&q'Q&r'R&r'S&s'T&u'V&u'V&v'X&v'X&w'Y&x'Z&y'[&z']&{'^&{'_&|(@&}(A&~(B&(C'`(E'a(F'a(G'b(H'c(H'd(J'e(L'f(N'g(N'h(O'i(P'i(Q'j(S'k(T'l(U'm(V'n(W'n(X'o(Y'q(['q(\'r(]'s(^'s(^'t(_'t)@'v)B'w)C'w)D'x)E'y)F'y)G'{)H'|)J'|)K'})L'~)M'~)N(`)O(a)Q(a)Q(b)S(c)S(d)T(d)U(e)V(f)X(g)Y(h)Z(i)[(i)\(j)](k)^(l*@(m*A(n*B(o*C(o*C(p*E(q*G(s*H(s*I(t*J(u*K(u*L(w*N(x*O(x*P(y*Q(z*R(z*S(|*T(}*V(}*W(~*X(*Y(*Y)`*Z)a*[)b*])c*^)d*_)d+@)e+A)f+B)g+C)h+E)i+F)j+G)j+H)k+H)l+J)m+L)n+L)o+N)o+N)p+O)q+P)q+Q)r+S)t+T)t+U)u+V)v+W)v+X)w+Y)y+[)y+\)z+]){+^){+^)|,@)},@)~,B),C),D*`,E*a,F*b,G*c,I*d,J*e,K*e,L*f,M*g,N*h,O*i,Q*j,Q*j,S*k,S*l,T*m,U*m,V*n,X*o,Y*p,Z*q,[*r,\*r,]*s,^*u-@*u-A*v-B*w-C*w-C*x-E*z-G*{-I*{-I*|-J*}-K*}-L*-N+`-O+`-P+a-Q+b-R+b-S+d-T+e-V+e-W+f-X+g-Y+h-Y+h-Z+i-[+j-]+k-^+l-_+m.@+m.A+n.B+o.C+p.E+q.F+r.G+s.H+s.I+t.J+u.L+v.L+w.N+w.N+x.O+y.P+y.Q+{.S+|.T+|.U+}.V+~.W+~.X,`.Y,a.[,a.\,b.],c.^,c.^,e/@,f/B,g/C,h/D,h/E,i/F,j/G,k/I,l/J,m/K,n/L,n/M,o/N,p/O,q/Q,r/Q,s/S,s/T,t/T,u/U,u/V,v/X,x/Y,x/Z,y/[,z/\,z/],{/^,}0@,}0A,~0B,0C,0C-a0E-b0G-b0G-c0I-c0I-d0J-e0K-f0L-g0N-h0O-i0P-i0Q-j0R-k0S-l0T-m0V-n0W-n0X-o0Y-p0Y-q0[-r0]-s0^-t0_-u1@-v1A-v1B-w1C-y1E-y1F-z1G-{1H-{1I-|1J-~1L-~1L-1N.`1O.`1O.a1P.a1Q.c1S.d1T.d1U.e1V.f1W.f1X.h1Y.i1[.i1\.j1].k1^.l1^.m2@.n2B.o2C.p2D.q2E.q2F.r2G.s2I.t2J.u2K.v2L.w2M.w2N.x2O.y2Q.z2R.{2S.|2T.|2T.}2U.}2V.2X/`2Y/`2Z/a2[/b2\/b2]/d2^/e3@/e3A/f3B/g3C/g3C/i3E/j3G/j3G/k3I/l3I/l3J/m3K/n3L/o3N/p3O/q3P/r3Q/r3R/s3S/t3T/t3U/v3W/w3X/w3Y/x3Z/y3[/z3\/z3]/{3]/|3_/}4A/~4A/4B/4C0`4D0a4F0b4G0c4H0d4I0e4J0e4K0f4L0g4N0h4O0i4P0i4P0j4R0k4S0k4S0m4U0n4W0n4W0o4X0p4Y0p4Z0r4\0s4]0s4^0t4_0u5@0u5A0w5B0x5D0y5F0z5F0z5G0{5I0|5I0}5K0~5L05M1`5N1`5O1a5P1b5R1c5S1d5T1e5U1e5V1f5W1g5X1g5X1h5Z1j5\1j5\1k5]1l5^1l5_1m6A1o6B1o6C1p6D1q6E1q6F1r6G1s6G1t6I1t6J1u6K1u6K1v6L1w6N1x6N1y6P1z6R1{6R1{6S1|6T1}6U1~6W16X2`6Y2`6Z2a6[2b6\2c6]2d6_2f7A2f7A2g7B2h7D2h7D2i7F2k7G2k7H2l7I2m7J2m7K2n7L2p7N2p7O2q7P2q7P2r7R2s7S2s7S2u7U2v7W2v7W2w7X2x7Y2x7Z2z7\2{7]2{7^2|7_2}8@2~8A28B3`8D3a8F3b8F3c8G3c8I3d8I3e8K3f8M3g8M3h8N3i8O3i8P3j8R3k8S3l8T3m8U3n8V3n8W3o8X3o8X3q8Z3r8\3r8\3s8]3t8^3t8_3v9A3w9B3w9C3x9D3y9E3y9F3{9G3|9I3|9J3}9K3~9K3~9M39N4`9N4a9P4b9R4c9R4d9S4d9T4e9U4f9W4g9X4h9Y4i9Z4i9[4j9\4k9]4l9_4n:A4n:A4o:B4p:D4p:D4q:F4s:G4s:H4t:I4u:J4u:K4w:M4x:N4x:O4y:P4z:Q4z:R4{:S4|:S4}:U4~:W4:W4:X5`:Y5a:Z5b:\5c:]5d:^5d:_5e;@5f;A5g;B5h;D5i;E5j;F5j;F5k;G5l;I5l;I5m;K5o;M5o;M5p;N5q;O5q;P5r;R5t;S5t;T5u;U/
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fitz
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Joined: 30 Sep 2005
Posts: 3257
Location: Tucson

PostPosted: Tue Jul 19, 2011 3:22 am    Post subject: Reply with quote

It means you're not actually using an XGterm window to run iraf. If you're using an XTerm then you can do a MKIRAF and change the terminal type, or do

Code:
cl> stty xtermjh ; gflush


on the commandline to change it. Terminals like rxvt, gnome-terminal, Terminal.app, etc do not support graphics and cannot be used for plots.
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surfcast23
Active IRAF User


Joined: 23 Jun 2011
Posts: 24

PostPosted: Tue Jul 19, 2011 4:09 am    Post subject: Reply with quote

Hi Fitz,

thanks for the reply. When I did the install I remember setting up an xgterm
doing

Code:
Initialize uparm? (y|n): y
Terminal types: xgterm,xterm,gterm,vt640,vt100,etc.


And typing xgtermc

Can I go back and redo it?
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surfcast23
Active IRAF User


Joined: 23 Jun 2011
Posts: 24

PostPosted: Tue Jul 19, 2011 4:20 am    Post subject: Reply with quote

This is from login.cl in the IRAF directory

Code:
set   home      = "/home/student/IRAF/"
set   imdir      = "/home/iraf/imdirs/student/"
set   uparm      = "home$uparm/"
set   userid      = "student"
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fitz
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Joined: 30 Sep 2005
Posts: 3257
Location: Tucson

PostPosted: Tue Jul 19, 2011 4:30 am    Post subject: Reply with quote

You can do a MKIRAF and reset the default terminal type at any time, this just recreates the login.cl file. Keep in mind however, this does NOT install xgterm for you or cause one to be started, it is simply your way of telling IRAF that you have logged in using an XGterm teminal window, but installing xgterm on your machine and starting it are up to you.
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surfcast23
Active IRAF User


Joined: 23 Jun 2011
Posts: 24

PostPosted: Tue Jul 19, 2011 4:30 am    Post subject: Reply with quote

fitz wrote:
It means you're not actually using an XGterm window to run iraf. If you're using an XTerm then you can do a MKIRAF and change the terminal type, or do

Code:
cl> stty xtermjh ; gflush


on the commandline to change it. Terminals like rxvt, gnome-terminal, Terminal.app, etc do not support graphics and cannot be used for plots.


Fitz,

Tried the above and got the same out put.

Code:
student@ubuntu:~/IRAF$ cl stty xtermjh ; gflush
setting terminal type to xgterm...


    NOAO/IRAF PC-IRAF Revision 2.15.1a EXPORT Mon Feb 21 18:54:16 MST 2011
     This is the EXPORT version of IRAF V2.15.1a supporting PC systems.


  Welcome to IRAF.  To list the available commands, type ? or ??.  To get
  detailed information about a command, type `help <command>'.  To run  a
  command  or  load  a  package,  type  its name.   Type  `bye' to exit a
  package, or `logout' to get out  of the CL.    Type `news' to find  out
  what is new in the version of the system you are using. 

  Visit http://iraf.net if you have questions or to report problems.

  The following commands or packages are currently defined:

      dataio.     language.   obsolete.   softools.   tables.     
      dbms.       lists.      plot.       stsdas.     utilities. 
      images.     noao.       proto.      system.     

ecl> noao
      artdata.      digiphot.     nobsolete.    onedspec.     
      astcat.       focas.        nproto.       rv.           
      astrometry.   imred.        observatory   surfphot.     
      astutil.      mtlocal.      obsutil.      twodspec.     

noao> onedspec
      aidpars@      dopcor        refspectra    scopy         slist
      autoidentify  fitprofs      reidentify    sensfunc      specplot
      bplot         identify      rspectext     setairmass    specshift
      calibrate     lcalib        sapertures    setjd         splot
      continuum     mkspec        sarith        sfit          standard
      deredden      names         sbands        sflip         telluric
      dispcor       ndprep        scombine      sinterp       wspectext
      disptrans     odcombine     scoords       skytweak     

onedspec> splot /home/student/COSMOS_files/magellan_opt_095737+024329_spec_31.fits
Image line/aperture to plot (0:) (1): 1
server # XGTERM.GUI -- Default GUI for Xgterm, providing a standard graphics terminal
# emulation.

reset-server
appInitialize irafterm IRAFterm {
    IRAFterm.objects:   toplevel Gterm gterm
    *allowShellResize:  true
    *gterm.warpCursor:  true
    *gterm.raiseWindow:  true
    *gterm.deiconifyWindow:  true
}
createObjects
send gterm setGterm
activate
sre[]ssz[R]
                  
                      rir
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surfcast23
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Joined: 23 Jun 2011
Posts: 24

PostPosted: Tue Jul 19, 2011 4:33 am    Post subject: Reply with quote

fitz wrote:
You can do a MKIRAF and reset the default terminal type at any time, this just recreates the login.cl file. Keep in mind however, this does NOT install xgterm for you or cause one to be started, it is simply your way of telling
IRAF that you have logged in using an XGterm teminal window, but installing xgterm on your machine and starting it are up to you.


Oh so I may not have XGterm installed? Thanks for that clarification I will check to see if I have it. If not should I install it in the iraf directory?
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fitz
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Joined: 30 Sep 2005
Posts: 3257
Location: Tucson

PostPosted: Tue Jul 19, 2011 4:39 am    Post subject: Reply with quote

Normally it would be installed in /usr/local/bin, you can get it from the X11IRAF distribution for your platform from ftp://iraf.noao.edu/iraf/x11iraf.

In the meantime, an XTerm should already be installed on your machine, you'll just need to reset the terminal type and login to iraf from the xterm window.
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surfcast23
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Joined: 23 Jun 2011
Posts: 24

PostPosted: Tue Jul 19, 2011 4:52 am    Post subject: Reply with quote

Fitz,

Did it by doing the following to start an XGterm

Code:
 cd /home/student/IRAF
student@ubuntu:~/IRAF$ xgterm &


Which opened another terminal. I then logged in using cl. I then changed directories to the directory containing the fits files which were then analyzed.

Is there anyway of having the Xterm automatically start when one starts iraf?

Again than you for your help!!
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fitz
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PostPosted: Tue Jul 19, 2011 5:02 am    Post subject: Reply with quote

Quote:
Is there anyway of having the Xterm automatically start when one starts iraf?


Not really, since the point is that you start iraf from within the xterm/xgterm window they need to be running first. You can however do

Code:
xterm -e cl


(or with 'xgterm') and have the xterm/xgterm window startup IRAF for you (assuming you do this from a directory with a login.cl file).[/quote]
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surfcast23
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Joined: 23 Jun 2011
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PostPosted: Tue Jul 19, 2011 5:19 am    Post subject: Reply with quote

Okay got it. Do you know of a good tutorial for Xgterm? Wanted to know because I tried to move to different lines in the Xterm, but was unable to.
thanks again
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fitz
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PostPosted: Tue Jul 19, 2011 5:24 am    Post subject: Reply with quote

There's no specific tutorial, but whatever you find for Xterm will generally apply to XGterm as well. If by 'move lines' you mean cut-n-paste, then use the left and middle mouse keys respectively.
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