iraf.net

I'm trying to install (for several astronomers) Mr. Stetson's daospec in a 64bit Linux CentOS. I already installed the needed system packages plus supermongo (version 2.4.34) plus 64bit Iraf 3.16.

Once I set the Iraf directories at Makefile (Makefile attached below), I compile and I get many references to /net iraf files (¿?) (see below the full output).

Please, If you've installed it, or you know someone who did, help me, it's important, we need it

Thanks in advance,

----------------

See the Makefile:

F77 = gfortran
FFLAGS = -c -O2 -fd-lines-as-comments
LFLAGS = -O2 -Wall -Wsurprising --defsym,mem_=0 -fbounds-check -C -lgcc
HOSTLIBS = -lm
IMFORT = /usr/local/iraf/iraf/bin.linux64/libimfort.a /usr/local/iraf/iraf/bin.linux64/libsys.a /usr/local/iraf/iraf/bin.linux64/libvops.a /usr/local/iraf/iraf/unix/bin.linux64/libos.a /usr/local/iraf/iraf/bin.linux64/libcompat.a
FITLIB = /usr/local/iraf/iraf/bin.linux64/libcfitsio.a
SMLIB = /usr/pkg/smongo/sm/lib


# RULES:
.SUFFIXES: .o .f
.f.o:
$(F77) $(FFLAGS) $

It got cut.
The Makefile was:

F77 = gfortran
FFLAGS = -c -O2 -fd-lines-as-comments
LFLAGS = -O2 -Wall -Wsurprising --defsym,mem_=0 -fbounds-check -C -lgcc
HOSTLIBS = -lm
IMFORT = /usr/local/iraf/iraf/bin.linux64/libimfort.a /usr/local/iraf/iraf/bin.linux64/libsys.a /usr/local/iraf/iraf/bin.linux64/libvops.a /usr/local/iraf/iraf/unix/bin.linux64/libos.a /usr/local/iraf/iraf/bin.linux64/libcompat.a
FITLIB = /usr/local/iraf/iraf/bin.linux64/libcfitsio.a
SMLIB = /usr/pkg/smongo/sm/lib


# RULES:
.SUFFIXES: .o .f
.f.o:
$(F77) $(FFLAGS) $<

daophot: daophot.o pckpsf.o find.o fotometry.o \
psf.o peak.o nstar.o fudge.o addstar.o substar.o \
group.o sort.o lnxsubs.o bothsubs.o iosubs.o mathsubs.o
$(F77) $(LFLAGS) -o daophot daophot.o pckpsf.o find.o fotometry.o \
psf.o peak.o nstar.o fudge.o addstar.o substar.o \
group.o sort.o lnxsubs.o bothsubs.o \
iosubs.o mathsubs.o \
$(IMFORT) $(HOSTLIBS) $(FITLIB\$this-\$this->_split2($m[0])_normalize_entities2($m[0])

allstar: allstar.o allstsubs.o lnxsubs.o \
iosubs.o mathsubs.o bothsubs.o
$(F77) $(LFLAGS) -o allstar allstar.o allstsubs.o \
lnxsubs.o iosubs.o mathsubs.o bothsubs.o \
$(IMFORT) $(HOSTLIBS) $(FITLIB\$this-\$this->_split2($m[0])_normalize_entities2($m[0])

daomaster: daomaster.o iosubs.o mathsubs.o lnxsubs.o dummysm.o
$(F77) $(LFLAGS) -o daomaster daomaster.o iosubs.o mathsubs.o lnxsubs.o dummysm.o

daomatch: daomatch.o iosubs.o mathsubs.o lnxsubs.o
$(F77) $(LFLAGS) -o daomatch daomatch.o iosubs.o mathsubs.o lnxsubs.o

montage2: montage2.o mathsubs.o iosubs.o lnxsubs.o bothsubs.o
$(F77) $(LFLAGS) -o montage2 montage2.o mathsubs.o iosubs.o lnxsubs.o bothsubs.o \
$(HOSTLIBS) $(IMFORT) $(FITLIB\$this-\$this->_split2($m[0])_normalize_entities2($m[0])

allframe: allframe.o bothsubs.o lnxsubs.o iosubs.o mathsubs.o
$(F77) $(LFLAGS) -o allframe allframe.o bothsubs.o \
lnxsubs.o iosubs.o mathsubs.o \
$(IMFORT) $(HOSTLIBS) $(FITLIB\$this-\$this->_split2($m[0])_normalize_entities2($m[0])

daogrow: daogrow.o iosubs.o mathsubs.o lnxsubs.o
$(F77) $(LFLAGS) -o daogrow daogrow.o iosubs.o mathsubs.o lnxsubs.o

daospec: daospec.o lnxsubs.o iosubs.o mathsubs.o bothsubs.o
$(F77) $(LFLAGS) -o daospec daospec.o lnxsubs.o iosubs.o mathsubs.o bothsubs.o \
$(IMFORT) $(HOSTLIBS) $(FITLIB\$this-\$this->_split2($m[0])_normalize_entities2($m[0]) -Bstatic -L$(SMLIB\$this-\$this->_split2($m[0])_normalize_entities2($m[0]) -lplotsub -ldevices -lutils -lX11

And the full output is:

$ make daospec
gfortran -O2 -Wall -Wsurprising --defsym,mem_=0 -fbounds-check -C -lgcc -o daospec daospec.o lnxsubs.o iosubs.o mathsubs.o bothsubs.o \
/usr/local/iraf/iraf/bin.linux64/libimfort.a /usr/local/iraf/iraf/bin.linux64/libsys.a /usr/local/iraf/iraf/bin.linux64/libvops.a /usr/local/iraf/iraf/unix/bin.linux64/libos.a /usr/local/iraf/iraf/bin.linux64/libcompat.a -lm /usr/local/iraf/iraf/bin.linux64/libcfitsio.a -Bstatic -L/usr/pkg/smongo/sm/lib -lplotsub -ldevices -lutils -lX11
/usr/local/iraf/iraf/bin.linux64/libimfort.a(imemsg.o): In function `imemsg_':
/net/iraf/u3/iraf/iraf.v2161/sys/imfort/imemsg.x:28: undefined reference to `s_copy'
/net/iraf/u3/iraf/iraf.v2161/sys/imfort/imemsg.x:31: undefined reference to `s_copy'
/net/iraf/u3/iraf/iraf.v2161/sys/imfort/imemsg.x:34: undefined reference to `s_copy'
/net/iraf/u3/iraf/iraf.v2161/sys/imfort/imemsg.x:37: undefined reference to `s_copy'
/net/iraf/u3/iraf/iraf.v2161/sys/imfort/imemsg.x:40: undefined reference to `s_copy'
/usr/local/iraf/iraf/bin.linux64/libimfort.a(imemsg.o):/net/iraf/u3/iraf/iraf.v2161/sys/imfort/imemsg.x:43: more undefined references to `s_copy' follow
/usr/local/iraf/iraf/bin.linux64/libimfort.a(imemsg.o): In function `imemsg_':
/net/iraf/u3/iraf/iraf.v2161/sys/imfort/imemsg.x:204: undefined reference to `i_len'
/usr/local/iraf/iraf/bin.linux64/libimfort.a(imgetl.o): In function `imgetl_':
/net/iraf/u3/iraf/iraf.v2161/sys/imfort/db/imgetl.x:25: undefined reference to `i_dnnt'
/usr/local/iraf/iraf/bin.linux64/libimfort.a(imfdir.o): In function `imgdir_':
/net/iraf/u3/iraf/iraf.v2161/sys/imfort/imfdir.x:17: undefined reference to `i_len'
/usr/local/iraf/iraf/bin.linux64/libimfort.a(idbpstr.o): In function `idbpug_':
/net/iraf/u3/iraf/iraf.v2161/sys/imfort/db/idbpstr.x:37: undefined reference to `i_dnnt'
/usr/local/iraf/iraf/bin.linux64/libsys.a(ctod.o): In function `ctod_':
/net/iraf/u3/iraf/iraf.v2161/sys/fmtio/ctod.x:82: undefined reference to `pow_ri'
/net/iraf/u3/iraf/iraf.v2161/sys/fmtio/ctod.x:130: undefined reference to `pow_di'
/net/iraf/u3/iraf/iraf.v2161/sys/fmtio/ctod.x:147: undefined reference to `pow_di'
/usr/local/iraf/iraf/bin.linux64/libsys.a(dtoc.o): In function `dtoc_':
/net/iraf/u3/iraf/iraf.v2161/sys/fmtio/dtoc.x:50: undefined reference to `pow_ri'
/usr/local/iraf/iraf/bin.linux64/libsys.a(dtoc3.o): In function `dtoc3_':
/net/iraf/u3/iraf/iraf.v2161/sys/fmtio/dtoc3.x:120: undefined reference to `pow_ri'
/usr/local/iraf/iraf/bin.linux64/libsys.a(dtcscl.o): In function `dtcscl_':
/net/iraf/u3/iraf/iraf.v2161/sys/fmtio/dtcscl.x:7: undefined reference to `pow_di'
/usr/local/iraf/iraf/bin.linux64/libsys.a(parg.o): In function `pargg_':
/net/iraf/u3/iraf/iraf.v2161/sys/fmtio/parg.x:119: undefined reference to `i_dnnt'
/net/iraf/u3/iraf/iraf.v2161/sys/fmtio/parg.x:176: undefined reference to `i_dnnt'
/usr/local/iraf/iraf/bin.linux64/libsys.a(xtoc.o): In function `xtoc_':
/net/iraf/u3/iraf/iraf.v2161/sys/fmtio/xtoc.x:19: undefined reference to `r_imag'
/usr/local/iraf/iraf/bin.linux64/libvops.a(f77pak.o): In function `f77pak_':
/net/iraf/u3/iraf/iraf.v2161/sys/osb/f77pak.f:11: undefined reference to `i_len'
/net/iraf/u3/iraf/iraf.v2161/sys/osb/f77pak.f:28: undefined reference to `s_copy'
/net/iraf/u3/iraf/iraf.v2161/sys/osb/f77pak.f:30: undefined reference to `s_copy'
/usr/local/iraf/iraf/bin.linux64/libvops.a(f77upk.o): In function `f77upk_':
/net/iraf/u3/iraf/iraf.v2161/sys/osb/f77upk.f:15: undefined reference to `i_len'
collect2: ld returned 1 exit status
make: *** [daospec] Error 1

Hi Dani

I have sucessfully compiled and installed DAOSPEC myself, in a Fedora 19 Linux box.

Comparing my Makefile with yours, I see that my IMFORT line includes also the library unix/bin.linux64/libf2c.a, which seems to be missing in the Makefile you posted.

Add it and try again.

Cheers

Nicola

I think Nicola's suggestion should work, the cause is that you're compiling the daospec code with gfortran, but the IRAF libraries were build using the iraf XC command (which is basically F2C/GCC). Note that the /usr/lib/libf2c.a that might already be on the machine won't always work depending on versions, it is best to use the one in $iraf/unix/bin.